7 Signs You Should Add AP Automation Software to QuickBooks

Accounts payable software compatible with QuickBooks for scaling companies
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MakersHub automates and simplifies accounts payable (AP) for businesses with complex operations and high payment volumes. Our solution streamlines bill capture, coding, approval routing, and payment processing, giving finance teams real-time visibility into project costs and cash flow. Learn more today.

Farah Shalwani
September 24, 2025

For many small businesses, QuickBooks is the go-to accounting solution. It is affordable, easy to use, and trusted by millions of businesses to manage finances. But as companies scale, one area that starts to show cracks is accounts payable. Manual invoice entry, long approval chains, and slow vendor payments begin to drag on productivity.

That is where QuickBooks AP automation comes in. By pairing QuickBooks with a purpose-built accounts payable automation solution, businesses can eliminate bottlenecks, reduce errors, and free finance teams to focus on more strategic work.

In this post, we will cover seven signs you have reached the tipping point and how AP software for scaling businesses can seamlessly integrate with QuickBooks to give you the best of both worlds.

Why QuickBooks Alone Is Not Enough for Growing AP Needs

QuickBooks is excellent at general accounting and bookkeeping, but accounts payable workflows require more sophistication as companies move into mid-market territory. AP touches vendors, operations, project managers, and finance leaders. When things break down, it does not just slow the back office, it impacts vendor relationships and cash flow.

That is why many scaling businesses look for accounts payable software compatible with QuickBooks. The goal is not to replace QuickBooks. It is to extend QuickBooks with AP automation so that the system you already trust continues to serve as your financial system of record without the inefficiencies of manual AP work.

1) You Are Drowning in Manual Invoice Entry

If your AP process still involves printing bills, re-keying data into QuickBooks, or chasing scanned PDFs, you are not alone. QuickBooks AP issues usually start here.

Manual entry creates delays because finance teams waste hours typing data. It leads to errors when an extra zero or incorrect vendor code makes its way into the books. And it results in missed discounts because the lag in processing means you cannot take advantage of early-payment opportunities.

With QuickBooks accounts payable automation, invoices are automatically captured, coded, and synced into QuickBooks with full line-item detail. No more copy and paste. No more errors. Just clean, structured data ready to go.

2) Approvals Are Stuck in Email Chains

At the SMB stage, it is manageable for one person to review every bill. But as you grow, with more locations, managers, and budgets, approvals get stuck in email inboxes or chat threads.

This creates bottlenecks in month-end close, zero visibility into where a bill stands, and compliance risks if approvals are not logged properly.

By adding AP automation for QuickBooks, approvals become centralized. Bills route automatically to the right manager with context like purchase orders, GL codes, or department tags. Every approval is tracked, timestamped, and synced back to QuickBooks for a clear audit trail.

3) Your Vendor Payments Are Slower Than They Should Be

Scaling companies need reliable vendor relationships and nothing strains trust like late or inconsistent payments. QuickBooks handles check runs and ACH payments, but managing them manually across hundreds of invoices is a recipe for delays.

When you use AP automation software integrated with QuickBooks, vendors can be paid via ACH, check, or virtual card directly through the platform. Payment status flows back into QuickBooks automatically. Finance teams gain more control over cash flow through better scheduling and better discount capture.

This does not just reduce late fees. It strengthens vendor partnerships.

4) Multi-Entity or Departmental Accounting Is Getting Messy

QuickBooks can manage multiple classes and locations, but coding bills accurately at scale is where things break down. A vendor invoice may touch multiple jobs, departments, or cost centers, and finance teams often resort to spreadsheets to reconcile.

AP software for scaling businesses solves this by assigning bills automatically to locations, departments, or jobs. Artificial intelligence mapping can recognize vendor-specific coding patterns. Coding syncs directly into QuickBooks without manual intervention.

The result is that each branch manager or department head sees an accurate P&L in real time without waiting on back-office cleanup.

5)  Your Month-End Close Is Taking Too Long

For small businesses, closing the books in QuickBooks might take a few days. For scaling companies, it can stretch into weeks. The reason is that AP data is scattered, incomplete, or inaccurate.

You know you have hit this wall when reconciling outstanding bills takes days of back and forth, when teams scramble to find missing approvals, and when vendors are calling to ask why their payments are not reflected.

QuickBooks AP automation consolidates all AP activity in one place. Every bill, approval, and payment is logged and synced in real time. Finance teams can close the books faster and with confidence that every number is backed by a clean audit trail.

6)  You Are Scaling Beyond SMB but AP Has Not Kept Up

The systems that worked when you were a 10-person finance team will not cut it when you are handling hundreds of invoices per week across multiple entities. Many companies hit a point where QuickBooks is still the right accounting software, but AP is the bottleneck holding growth back.

This is when accounts payable software compatible with QuickBooks becomes critical. By layering automation onto QuickBooks, you avoid the pain and cost of moving to a full ERP system before you are ready, while still getting enterprise-grade AP capabilities.

7)  Your Team Is Burned Out on Low-Value Work

Finally, the human cost. When AP teams spend their days chasing invoices, typing data, or reconciling vendor statements, morale drops. Talented finance leaders want to drive insights and strategy, not babysit approvals.

By pairing QuickBooks with AP automation software, your team reclaims hours every week. Manual busywork disappears. Finance leaders can focus on cash flow, budgeting, and growth initiatives.

The return on investment is clear: happier teams, cleaner books, and more strategic focus.

What to Look for in AP Automation Software for QuickBooks

Not all AP solutions are created equal. When evaluating AP automation for QuickBooks, look for deep QuickBooks integration with two-way sync, AI-powered data capture that includes line-item extraction, customizable approval workflows, multi-entity support, and flexible payments including ACH, check, and virtual card.

Why MakersHub and QuickBooks Work Better Together

At MakersHub, we have built AP automation specifically for growing companies who rely on QuickBooks. Unlike generic tools, we focus on the pain points of scaling businesses moving from SMB to mid-market.

Our customers benefit from AI-powered line-item capture so every invoice is coded accurately. Approvals route intelligently across managers, branches, and entities. Smart Data Connect handles POs, receipts, and invoices in any format. Our QuickBooks integration is robust with true two-way sync. And payment flexibility means you can pay vendors faster and with fewer errors.

Customers have reduced AP processing times by as much as 80 percent, captured discounts they used to miss, and achieved month-end close three times faster, all while keeping QuickBooks as their financial system of record.

Final Thoughts on Scaling with Confidence

If you recognize these seven signs, whether it is slow approvals, manual entry, delayed payments, or burned-out teams, it is time to consider QuickBooks AP automation. Pairing QuickBooks with purpose-built AP software lets you scale confidently without jumping to an ERP before you are ready.

Your accounting system stays the same. Your AP process gets faster, smarter, and more reliable. And most importantly, your finance team can stop chasing invoices and start driving strategy.

Ready to see how MakersHub supercharges QuickBooks with AP automation? Book a demo today.

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